Following the BFD* tutorial recommendations, the priors for the runs were computed from the tree height, for the estimation of Yule model birth rate, and the mean within-species divergence, as theta ...

Bio-CPD detects cliff points (tipping points / critical transitions) along continuous single-cell trajectories such as pseudotime, developmental time, or aging. It scans a sliding window across the ...

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This aligns with autoregressive inference but also introduces exposure bias—models never see their own mistakes during training. 𝐀𝐥𝐭𝐞𝐫𝐧𝐚𝐭𝐢𝐯𝐞𝐬: Masked LM (BERT), permutation LM (XLNet), or ...